Bioinformatics Analysis of the Molecular Networks Associated with the Amelioration of Aberrant Gene Expression by a Tyr–Trp Dipeptide in Brains Treated with the Amyloid-β Peptide Reviewed International journal

Hamano M., Ichinose T., Yasuda T., Ishijima T., Okada S., Abe K., Tashiro K., Furuya S.

Nutrients   15 ( 12 )   2023.06

TEAD1 trapping by the Q353R–Lamin A/C causes dilated cardiomyopathy Reviewed

Yamada S., Ko T., Ito M., Sassa T., Nomura S., Okuma H., Sato M., Imasaki T., Kikkawa S., Zhang B., Yamada T., Seki Y., Fujita K., Katoh M., Kubota M., Hatsuse S., Katagiri M., Hayashi H., Hamano M., Takeda N., Morita H., Takada S., Toyoda M., Uchiyama M., Ikeuchi M., Toyooka K., Umezawa A., Yamanishi Y., Nitta R., Aburatani H., Komuro I.

Science Advances   9 ( 15 )   2023.04

Reciprocal expression of the immune response genes CXCR3 and IFI44L as module hubs are associated with patient survivals in primary central nervous system lymphoma Reviewed

Takashima Y., Hamano M., Yoshii K., Hayano A., Fukai J., Iwadate Y., Kajiwara K., Hondoh H., Yamanaka R.

International Journal of Clinical Oncology   28 ( 3 )   468 - 481   2023.03

Myocardial DNA Damage Predicts Heart Failure Outcome in Various Underlying Diseases Reviewed International journal

Dai Z., Ko T., Fujita K., Nomura S., Uemura Y., Onoue K., Hamano M., Katoh M., Yamada S., Katagiri M., Zhang B., Hatsuse S., Yamada T., Inoue S., Kubota M., Sawami K., Heryed T., Ito M., Amiya E., Hatano M., Takeda N., Morita H., Yamanishi Y., Saito Y., Komuro I.

JACC: Heart Failure   12 ( 4 )   648 - 661   2023.01

Small compound-based direct cell conversion with combinatorial optimization of pathway regulations Reviewed International journal

Toru Nakamura, Michio Iwata, Momoko Hamano, Ryohei Eguchi, Jun-ichi Takeshita, Yoshihiro Yamanishi

Bioinformatics ( Bioinformatics )   2022.09

TRANSDIRE: Data-driven direct reprogramming by a pioneer factor-guided trans-omics approach Reviewed International journal

Eguchi R., Hamano M., Iwata M., Nakamura T., Oki S., Yamanishi Y.

Bioinformatics   38 ( 10 )   2839 - 2846   2022.04

Hepatocyte-specific phgdh-deficient mice culminate in mild obesity, insulin resistance, and enhanced vulnerability to protein starvation Invited Reviewed

Hamano M., Esaki K., Moriyasu K., Yasuda T., Mohri S., Tashiro K., Hirabayashi Y., Furuya S.

Nutrients   13 ( 10 )   2021.10

Transcriptional activation of chac1 and other atf4-target genes induced by extracellular l-serine depletion is negated with glycine consumption in hepa1-6 hepatocarcinoma cells Reviewed

Hamano M., Tomonaga S., Osaki Y., Oda H., Kato H., Furuya S.

Nutrients   12 ( 10 )   1 - 11   2020.10

GSEA-assisted gene signatures valid for combinations of prognostic markers in PCNSL Reviewed International journal

Takashima Y., Hamano M., Fukai J., Iwadate Y., Kajiwara K., Kobayashi T., Hondoh H., Yamanaka R.

Scientific Reports   10 ( 1 )   2020.05

Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm Reviewed

Iwata M., Yuan L., Zhao Q., Tabei Y., Berenger F., Sawada R., Akiyoshi S., Hamano M., Yamanishi Y.

Bioinformatics   35 ( 14 )   i191 - i199   2019.07

Enhanced vulnerability to oxidative stress and induction of inflammatory gene expression in 3-phosphoglycerate dehydrogenase-deficient fibroblasts Reviewed

Hamano M., Haraguchi Y., Sayano T., Zyao C., Arimoto Y., Kawano Y., Moriyasu K., Udono M., Katakura Y., Ogawa T., Kato H., Furuya S.

FEBS Open Bio   8 ( 6 )   914 - 922   2018.06

Microarray data on altered transcriptional program of Phgdh-deficient mouse embryonic fibroblasts caused by L-serine depletion Reviewed International journal

Momoko Hamano, Tomoko Sayano, Wataru Kusada, Hisanori Kato, Shigeki Furuya

Data in Brief   7   1598 - 1601   2016.04

Adaptive response to l-serine deficiency is mediated by p38 MAPK activation via 1-deoxysphinganine in normal fibroblasts Reviewed

Sayano T., Kawano Y., Kusada W., Arimoto Y., Esaki K., Hamano M., Udono M., Katakura Y., Ogawa T., Kato H., Hirabayashi Y., Furuya S.

FEBS Open Bio   6 ( 4 )   303 - 316   2016.04