Affiliation
Faculty of Computer Science and Systems Engineering Department of Bioscience and Bioinformatics
Job
Professor
External link
HANADA Kosuke
Scopus Paper Info
Total Paper Count: 0 Total Citation Count: 0 h-index: 14
Research Interests
-
genomics
Degree
-
The Graduate University for Advanced Studies - Doctor of Science 2003.03
Biography in Kyutech
-
2022.04
Kyushu Institute of Technology Advanced Research and Social Cooperation Headquarters Research Center of Synthetic Biology
-
2020.06
Kyushu Institute of Technology Faculty of Computer Science and Systems Engineering Department of Bioscience and Bioinformatics Professor
-
2020.04-2022.03
Kyushu Institute of Technology Organization for Promotion of Research and Open Innovation Engineering Research Center of Plant Synthetic Biology
-
2019.04-2020.05
Kyushu Institute of Technology Faculty of Computer Science and Systems Engineering Department of Bioscience and Bioinformatics Associate Professor
-
2017.04-2019.03
Kyushu Institute of Technology Faculty of Computer Science and Systems Engineering Department of Bioscience and Bioinformatics Associate Professor
-
2012.10-2017.03
Kyushu Institute of Technology Frontier Research Academy for Young Researchers Associate Professor
Papers
-
A de novo gene originating from the mitochondria controls floral transition in Arabidopsis thaliana Reviewed International journal
Tomoyuki Takeda, Kazumasa Shirai, You-wang Kim, Mieko Higuchi-Takeuchi, Minami Shimizu, Takayuki Kondo, Tomokazu Ushijima, Tomonao Matsushita, Kazuo Shinozaki, Kousuke Hanada
Plant Molecular Biology 2023.04
-
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants Reviewed International journal
Kazumasa Shirai, Mitsuhiko P. Sato, Ranko Nishi, Masahide Seki, Yutaka Suzuki and Kousuke Hanada
Genome Research 31 1060 - 1068 2021.06
-
Unearth of small open reading frames (sORFs) in drought stress transcriptome of Oryza sativa subsp. indica Reviewed
Sheue Ni Ong, Boon Chin Tan, Kousuke Hanada, Chee How Teo
Gene 2023.06
-
An augmented attention-based lightweight CNN model for plant water stress detection Reviewed
Mohd Hider Kamarudin, Zool Hilmi Ismail, Noor Baity Saidi, Kousuke Hanada
Applied Intelligence 2023.04
-
Enhanced growth rate under elevated CO2 conditions was observed for transgenic lines of genes identified by intraspecific variation analyses in Arabidopsis thaliana Reviewed
Riichi Oguchi, Kousuke Hanada, Minami Shimizu, Masako Mishio, Hiroshi Ozaki, Kouki Hikosaka
Plant Molecular Biology 1 - 13 2022.04
-
Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron Reviewed International journal
Reunreudee Kaewcheenchai,Phanchita Vejchasarn, Kousuke Hanada,Kazumasa Shirai,Chatchawan Jantasuriyarat, Piyada Juntawong
Plants 10 ( 4 ) 798 2021.04
-
Degree of functional divergence in duplicates is associated with distinct roles in plant evolution. Reviewed
Akihiro Ezoe, Kazumasa Shirai, Kousuke Hanada
Molecular Biology and Evolution 38 ( 4 ) 1447 - 1459 2021.04
-
植物と共生菌の間でのシグナル伝達するペプチドの探索に向けて Invited
伊東 梓帆, 花田耕介
アグリバイオ 5 ( 5 ) 52 - 54 2021.03
-
塩ストレス耐性を強化するペプチド性遺伝子 Invited
近藤 隆之, 花田耕介
アグリバイオ 5 ( 5 ) 23 - 28 2021.03
-
Effect of small coding genes on the circadian rhythms under elevated CO2 conditions in plants. Reviewed International journal
Mieko Higuchi-Takeuchi, Takayuki Kondo, Minami Shimizu, You-Wang Kim, Kazuo Shinozaki, Kousuke Hanada
Plant Molecular Biology 104 ( 1-2 ) 55 - 65 2020.09
-
豚で起きていたコロナウイルスに近縁なウイルスでのパンデミック感染の紹介 Invited Reviewed
花田 耕介
生物の化学「遺伝」 75 ( 1 ) 16 - 19 2020.05
-
Identification of endogenous small peptides involved in rice immunity through transcriptomics‐and proteomics‐based screening Reviewed
12. Wang P, Yao S, Kosami KI, Guo T, Li J, Zhang Y, Fukao Y, Kaneko‐Kawano Y, Zhang H, She YM, Wang P, Xing W, Hanada K, Liu R, Kawano
Plant Biotechnology Journal 18 ( 2 ) 415 - 428 2020.02
-
Contribution of Functional Divergence Through Copy Number Variations to the Inter-Species and Intra-Species Diversity in Specialized Metabolites Invited Reviewed
Shirai K., Hanada K.
Frontiers in Plant Science 10 2019.11
-
Tyr82 amino acid mutation in pb1 polymerase induces an influenza virus mutator phenotype Reviewed
Naito T., Shirai K., Mori K., Muratsu H., Ushirogawa H., Ohniwa R., Hanada K., Saito M.
Journal of Virology 93 ( 22 ) 2019.11
-
Dephosphorylation of clustered phosphoserine residues in human Grb14 by protein phosphatase 1 and its effect on insulin receptor complex formation Reviewed
Taira J., Yoshida K., Takemoto M., Hanada K., Sakamoto H.
Journal of Peptide Science 25 ( 10 ) 2019.10
-
Hormone-like peptides and small coding genes in plant stress signaling and development Invited Reviewed
Takahashi F., Hanada K., Kondo T., Shinozaki K.
Current Opinion in Plant Biology 51 88 - 95 2019.10
-
Transcriptome analysis and identification of a transcriptional regulatory network in the response to H<inf>2</inf>O<inf>2</inf> Reviewed
Hieno A., Naznin H., Inaba-Hasegawa K., Yokogawa T., Hayami N., Nomoto M., Tada Y., Yokogawa T., Higuchi-Takeuchi M., Hanada K., Matsui M., Ikeda Y., Hojo Y., Hirayama T., Kusunoki K., Koyama H., Mitsuda N., Yamamoto Y.
Plant Physiology 180 ( 3 ) 1629 - 1646 2019.07
-
Transcriptome data and transgenic library of overexpression for small coding genes of <i>Arabidopsis thaliana</i> Invited
Takeda Tomoyuki, Hanada Kousuke
Regulation of Plant Growth & Development ( The Japanese Society for Chemical Regulation of Plants ) 54 ( 1 ) 60 - 65 2019.01
-
A highly specific genome-wide association study integrated with transcriptome data reveals the contribution of copy number variations to specialized metabolites in Arabidopsis thaliana accessions Reviewed
2017.09
-
Mutant selection in the self-incompatible plant radish (Raphanus sativus L. var. sativus) using two-step TILLING. Reviewed
67 ( 3 ) 268 - 276 2017.06
-
Molecular Evolution and Functional Characterization of a Bifunctional Decarboxylase Involved in Lycopodium Alkaloid Biosynthesis. Reviewed
171 ( 4 ) 2432 - 2444 2016.06
-
What plant trait explains the variations in relative growth rate and in its response to the elevated CO2 concentration among Arabidopsis thaliana ecotypes derived from a variety of habitats? Reviewed
Oecologia 2016.05
-
Phytochrome controls alternative splicing to mediate light responses in Arabidopsis. Reviewed
2014.12
-
Transcriptomic analysis of rice in response to iron deficiency and excess. Reviewed
2014.09
-
Substantial expression of novel small open reading frames in Oryza sativa.
2014.02
-
25. Identification and biochemical characterization of wheat ABA receptors, which are identified by bioinformatics analysis Invited
Mega Ryosuke, Hanada Kousuke, Okamoto Masanori
The Janapese Society for Chemical Regulation of Plants, Abstract ( The Janapese Society for Chemical Regulation of Plants ) 49 ( 0 ) 2014.01
-
Small open reading frames associated with morphogenesis are hidden in plant genomes. Reviewed
110 2395 - 2400 2013.02
-
Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads. Reviewed
( 28 ) 929 - 937 2012.04
-
Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Reviewed
69 ( 1 ) 154 - 167 2012.01
-
Tissue-specific Transcriptome Analysis Reveals Cell Wall Metabolism, Flavonol Biosynthesis, and Defense Responses are Activated in the Endosperm of Germinating Arabidopsis thaliana Seeds. Reviewed
2012.01
-
Origin and evolution of genes related to ABA metabolism and its signaling pathways. Reviewed
124 ( 4 ) 455 - 465 2011.07
-
An evolutionary view of functional diversity in family 1 glycosyltransferases. Reviewed
66 ( 1 ) 182 - 193 2011.04
-
ARTADE2DB: Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic-Structure-Based Dynamic Expression (DSDE) Analyses. Reviewed
52 ( 2 ) 254 - 264 2011.02
-
Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources.
123 ( 3 ) 291 - 298 2010.05
-
sORF finder: a program package to identify small open reading frames with high coding potential. Reviewed
26 ( 3 ) 399 - 400 2010.02
-
Evolutionary Persistence of Functional Compensation by Duplicate Genes in Arabidopsis. Reviewed
29 ( 1 ) 409 - 414 2009.10
-
PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants. Reviewed
50 ( 7 ) 1249 - 1259 2009.07
-
Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Reviewed
150 ( 1 ) 12 - 26 2009.05
-
Increased expression and protein divergence in Increased expression and protein divergence in duplicate genes is associated with morphological diversification. Reviewed
5 ( 12 ) 2009.05
-
Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Reviewed
106 ( 7 ) 2453 - 2458 2009.02
-
Functional role of Pack-MULEs in rice inferred from purifying selection and expression profile. Reviewed
21 ( 1 ) 25 - 38 2009.01
Conference Prsentations (Oral, Poster)
-
Lineage-Specifically Emerged Genes in Plant Evolution Invited
Kousuke Hanada
Biodiversity Research Center, Academia Sinica
-
糸状菌への耐性を強化する植物分泌ペプチドの同定
早瀬尚人 近藤隆之 白井一正 桑田啓子 柘植尚志 花田耕介
第14回中国地域育種談話会, 山口大学
-
多様な植物共生菌による植物の生理活性変化の分化メカニズムの解明
伊東梓帆・荒巻徹・山崎裕司・辻本壽・花田耕介
鳥取大学乾燥地研究センター、令和４年度共同研究発表会
-
Identification of genes and signaling pathways inferred by plant omics data Invited
Kousuke Hanada
Global ATGS/International College, National Taiwan University
-
AI技術で生物進化の原動力になる遺伝子群の同定 Invited
花田耕介
AIシンポジウム「生物工学×AI＝∞ ～生物工学におけるAI活用術～」
-
Secreted peptide AT32 inhibits brassinosteroid signaling via binding to brassinosteroid receptor.
T. Kondo, T. Takeda, I. Ohbayashi, You-wang Kim, M. Okamoto, Y. Kodama, T. Yoshizumi, T. Haraguchi, M. Higuchi-Takeuchi, M. Shimizu, M. Nomoto, Y. Tada, Y. Jikumaru, Y. Kamiya, K. Shinozaki, K. Kuwata, S. Oishi, J. Taira, H. Sakamoto, T. Kusakabe, J.M. Li, K. Hanada
第63回日本植物生理学会年会
-
A mitochondria-originating de-novo gene controls flowering timing in <i>Arabidopsis thaliana
Tomoyuki Takeda1, Kazumasa Shirai1, You-wang Kim1, Mieko Higuchi-Takeuchi2, Minami Shimizu2, Takayuki Kondo1, Tomokazu Ushijima3, Tomonao Matsusita4, Kazuo Shinozaki2, Kousuke Hanada1
第63回日本植物生理学会年会
-
植物病原性糸状菌に存在するCD染色体の進化的起源の解明
大石 好則・播本 佳明 ・八田理恵子・新城 明久・張 裕介・間瀬 千晶・原 歩美・川瀬めぐみ・近藤日佳理・後藤 千保・宮川 泰輝・鈴木 侑美・森 汐理・赤木 靖典・児玉基一朗・秋光 和也・山本 幹博・柘植 尚志・花田 耕介
第13回中国地域育種談話会
-
植物病原性糸状菌に存在するCD染色体の進化的起源の解明
大石 好則・播本 佳明 ・八田理恵子・新城 明久・張 裕介・間瀬 千晶・原 歩美・川瀬めぐみ・近藤日佳理・後藤 千保・宮川 泰輝・鈴木 侑美・森 汐理・赤木 靖典・児玉基一朗・秋光 和也・山本 幹博・柘植 尚志・花田 耕介
第4回植物インフォマティクス研究会
-
植物のDNAメチル化に対するSelective sweepの検出
白井 一正，佐藤 光彦，仁志 蘭子，関 真秀，鈴木 穣，花田 耕介
第4回植物インフォマティクス研究会
-
トランスクリプトームとプロテオーム解析を用いた 植物免疫を上昇させる細胞外分泌ペプチドの探索
花田耕介
日本プロテオーム学会
-
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants Invited
Kousuke Hanada
Genome Concept Centennial Symposium
-
Frequently observed convergent evolution by either protein divergence generated by transcription starting sites (TSS) shifts or by gene duplication under red-light response in three plants
江副 晃洋、牛島 智一、岡義人、金載旭、Zhang Ping、You-Liang Cheng、 Shih-Long Tu、鈴木穣、白井一正、松下 智直、花田耕介
第22 回日本進化学会年会、オンライン開催
-
ブラシノステロイドのシグナル伝達を阻害する新奇分泌ペプチドの機能解析
近藤隆之，大林祝，金有王，岡本昌憲，児玉豊，吉積毅，原口武士，樋口美栄子，清水みなみ，野元美佳，多田安臣，軸丸裕介，神谷勇治，篠崎一雄，桑田啓子，大石俊輔，日下部宜宏，李在萬， 花田耕介
第61回日本植物生理学会年会
-
Functional Analysis of novel small coding gene in plant genome
T.Takeda, K.Nakaminami, M.Higuch-Takeuchi, YW.Kim, M.Shimizu, M.Okamoto, T.Yoshizumi, R.Nishi, M.Seki, K.Shinozaki, M.Matsui, K.Hanada
第61回日本植物生理学会年会
-
植物での赤色光シグナル下での転写開始点制御と重複遺伝子の代替的役割
江副 晃洋、牛島 智一、Zhang Ping、You－Liang Cheng、Shih-Long Tu、鈴木 穣、阿久根 清羅、白井 一正、松下 智直、花田 耕介
第42回日本分子生物学会年会
-
植物ゲノムに存在するペプチド性新奇短い遺伝子の機能解析
武田智之、金有王、樋口美栄子、清水みなみ、岡本昌憲、吉積毅、中南健太郎、仁志蘭子、関原明、篠崎一雄、松井南、花田耕介
第42回日本分子生物学会年会
-
ブラシノステロイドのシグナル伝達を阻害する新奇分泌ペプチドの機能解析
近藤隆之，大林祝，金有王，岡本昌憲，児玉豊，吉積毅，原口武士，樋口美栄子，清水みなみ，野元美佳，多田安臣，軸丸裕介，神谷勇治，篠崎一雄，桑田啓子，大石俊輔，日下部宜宏，李在萬， 花田耕介
第42回日本分子生物学会年会
-
Finding a Novel Hormone-like Peptide Inducing Anti-biotic effects and Callus formation
Y. Nishimura, R. Torii, Y. Kim, M. Higuchi, I. Ohbayashi, M. Okamoto, M. Shimizu, T. Yoshizumi, K. Nakaminami, K. Shinozaki, M. Seki, M. Matui, K. Hanada
7th International Symposium on Applied Engineering and Science (Malaysia)
-
To Understand Symbiotic Effects of Fungal Endophytes Isolated from Various Crops
Tatsuya Toyodome, Amalia Mohd. Hashim, Noor Baity Saidi, Mohd Termizi Yusof, Wan Zuhainis Saad, Kousuke Hanada
7th International Symposium on Applied Engineering and Science (Malaysia)
-
植物のゲノム解析を 10年ちょっとやってきて。。。 Invited
花田耕介
植物分子生物学シンポジウム
-
The origin and evolution of Japanese cultivated radishes. Invited
Kousuke Hanada
The 17th Asian Bioinformatics Consortium
Industrial Property
-
接木接着剤
野田口理孝, 白武勝裕, 黒谷賢一, 田畑亮, 川勝弥一, 川口航平, 深尾陽一郎, 中林亮, 花田耕介
-
植物病原菌に対する抗菌活性を有する抗菌ペプチド
阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田（桑田）啓子
-
植物病原菌に対する抗菌活性を有する抗菌ペプチド
阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田（桑田）啓子
-
植物病原菌に対する抗菌活性を有する抗菌ペプチド
阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田（桑田）啓子
-
植物病原菌に対する抗菌活性を有する抗菌ペプチド
阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田（桑田）啓子
Lectures
-
AI技術で生物進化の原動力になる遺伝子群の同定
関西支部若手企画シンポジウム 2022.08
-
トランスクリプトームとプロテオーム解析を用いた 植物免疫を上昇させる細胞外分泌ペプチドの探索
日本プロテオーム学会 2021.07
-
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
Genome Concept Centennial Symposium 2021.02
-
Novel small hormone-like peptides in Arabidopsis
SCMB MBS Special Seminar, The University of Queensland, Australia 2020.02
-
Symbiotic Effect of Fungal Endophyte is Controlled by Salicylic Acid Signaling.
7th International Symposium on Applied Engineering and Science (Malaysia) 2019.11
-
日本栽培ダイコンの進化とその起源
第21回 日本進化学会（北海道） 2019.08
-
Small coding genes hidden in plant genomes, encode multiple hormone-like peptides
Japan-Taiwan Plant Biology 2019 2019.03
-
ゲノム解析で見えない遺伝子に迫る
第５０回サイエンスカフェ （九工大・飯塚キャンパス） 2019.01
-
重複遺伝子の冗長的な機能による頑健性の意義
東北大学理学部キャンパス生物セミナー 2018.11
Honors and Awards
-
研究奨励賞 「網羅的なゲノム情報を利用した進化ゲノミクス研究」
日本進化学会 2014.06
花田耕介
-
九州工業大学職員 SS評価に基づく表彰
九州工業大学 2014.03.06
花田耕介
-
研究奨励賞 「Breakthrough in evolutionary mechanism of duplicate genes based on bioinformatics」
理化学研究所 2012.03
花田 耕介
Grants-in-Aid for Scientific Research
-
シロイヌナズナ生態株間の二次代謝産物量をコントロールするncRNA遺伝子の役割
Grant number：25710017 2013.04 - 2016.03 若手研究(A)
-
アルタナリア病原菌の植物寄生性を決定するCD染色体の進化的起源と成立機構
Grant number：23248007 2011.04 - 2015.03 基盤研究(A)
Career of Research abroad
-
Emergence of genes in Arabidopsis population
Gregor Mendel Institute of Molecular Plant Biology Project Year: 2023.11.01 - 2024.04.30
Award for Educational Activities
-
優秀発表賞（豊留、中国地域育種談話会)
中国地域育種談話会 2020.12
-
優秀発表賞（豊留 中国地域育種談話会）
中国地域育種談話会 2019.12
-
優秀発表賞（武田 中国地域育種談話会）
中国地域育種談話会 2018.12
Activities of Academic societies and Committees
-
文部科学省 科研費・審査委員
2022.08
-
Frontiers in Genetics Associate editor
2022.05
-
植物インフォマティクス研究会 運営委員
2018.09
Social activity outside the university
-
最先端の研究を介した教育活動
Role(s)：Lecturer
筑紫女学園中等部 2023.09.01
-
ゲノム情報を活用した 生命メカニズムの解明
Role(s)：Lecturer
九州大学工業大学 福岡県立福岡高等学校 2022.07.22
-
未来へつなげるバイオテクノロジー－生物を理解し社会に役立てる－
Role(s)：Lecturer
九州大学工業大学 福岡県立福岡高等学校 2022.07.15
Citation count denotes the number of citations in papers published for a particular year.