Updated on 2025/09/12

 
HANADA Kosuke
 
Scopus Paper Info  
Total Paper Count: 0  Total Citation Count: 0  h-index: 16

Citation count denotes the number of citations in papers published for a particular year.

Affiliation
Faculty of Computer Science and Systems Engineering Department of Bioscience and Bioinformatics
Job
Professor
External link

Research Interests

  • genomics

Degree

  • The Graduate University for Advanced Studies  -  Doctor of Science   2003.03

Biography in Kyutech

  • 2022.04
     

    Kyushu Institute of Technology   Advanced Research and Social Cooperation Headquarters   Research Center of Synthetic Biology  

  • 2020.06
     

    Kyushu Institute of Technology   Faculty of Computer Science and Systems Engineering   Department of Bioscience and Bioinformatics   Professor  

  • 2020.04
    -
    2022.03
     

    Kyushu Institute of Technology   Organization for Promotion of Research and Open Innovation   Engineering Research Center of Plant Synthetic Biology  

  • 2019.04
    -
    2020.05
     

    Kyushu Institute of Technology   Faculty of Computer Science and Systems Engineering   Department of Bioscience and Bioinformatics   Associate Professor  

  • 2017.04
    -
    2019.03
     

    Kyushu Institute of Technology   Faculty of Computer Science and Systems Engineering   Department of Bioscience and Bioinformatics   Associate Professor  

  • 2012.10
    -
    2017.03
     

    Kyushu Institute of Technology   Frontier Research Academy for Young Researchers   Associate Professor  

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Academic Society Memberships

  • 2024.08 - 2024.09   第7回植物インフォマティクス研究会年会、主宰(九州工業大)   Japan

  • 2024.08   日本進化学会、ワークショップ「パンゲノム解析から見出されるゲノム多様性」のオーガナイザー   Japan

  • 2023.09   植物インフォマティクス研究会 副会長   Japan

  • 2023.08   日本進化学会、シンポジウム「植物の多様性を生み出す進化」のオーガナイザー   Japan

  • 2025.09   Thematic Event on Scientific and Technological Innovation Underpinning Rural Revitalizationへの招待   China

  • 2018.09   植物インフォマティクス研究会   Japan

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Papers

  • Arabidopsis LOHN1 peptide modulates lateral root spacing under the control of systemic nitrogen-satiety signaling. Reviewed

    12. Ito K, Sonoda T, Hisanaga Y, Iwata K, Goto C, Shirai K, Goto M, Yamamoto A, Mabuchi A, Song B, Negi J, Suzuki T, Fukaki H, Hanada K, Iba K, Kusumi K.

    Current Biology   2025.09

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    Language:English   Publishing type:Research paper (scientific journal)

  • A de novo gene originating from the mitochondria controls floral transition in Arabidopsis thaliana Reviewed International journal

    Tomoyuki Takeda, Kazumasa Shirai, You-wang Kim, Mieko Higuchi-Takeuchi, Minami Shimizu, Takayuki Kondo, Tomokazu Ushijima, Tomonao Matsushita, Kazuo Shinozaki, Kousuke Hanada

    Plant Molecular Biology   2023.04

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: https://doi.org/10.1007/s11103-022-01320-6

  • Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants Reviewed International journal

    Kazumasa Shirai, Mitsuhiko P. Sato, Ranko Nishi, Masahide Seki, Yutaka Suzuki and Kousuke Hanada

    Genome Research   31 ( 6 )   1060 - 1068   2021.06

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    Authorship:Last author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1101/gr.271726.120

    DOI: 10.1101/gr.271726.120

    Scopus

    Other Link: https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85107711047&origin=inward

  • Cryptochromes Induce Genome-Wide Changes in Alternative Transcription Start Site Selection in Arabidopsis Reviewed

    Oka Y, Shirai K, Kimura I, Shimada T, Hanada K, Matsushita T.

    Biochem Biophys Res Commun .   2025.09

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    Language:English   Publishing type:Research paper (scientific journal)

  • Florigen-producing cells express FPF1-LIKE PROTEIN 1 to accelerate flowering and stem growth in Arabidopsis. Reviewed

    Takagi H, Lee N, Hempton AK, Purushwani S, Notaguchi M, Yamauchi K, Shirai, Kawakatsu Y, Uehara S, Albers WG, Downing BLR, Ito S, Suzuki T, Matsuura T, Mori IC, Mitsuda N, Kurihara D, Matsushita T, Song YH, Sato Y, Nomoto M, Uchida N, Tada Y, Hanada K, Cuperus JT, Queitsch C, Imaizumi T.

    Developmental Cell.   2025.07

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    Language:English   Publishing type:Research paper (scientific journal)

  • High TCR Degeneracy Enhances Antiviral Efficacy of HTLV-1-Specific CTLs by Targeting Variant Viruses in HAM Patients. Reviewed

    3. Kubota R, Hanada K, Saito M, Dozono M, Nozuma S, Takashima H.

    International Journal of Molecular Sciences   2025.07

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    Language:English   Publishing type:Research paper (scientific journal)

  • Alternative localization of HEME OXYGENASE 1 in plant cells regulates cytosolic heme catabolism. Reviewed

    6. Chen Y, Nishimura K, Tokizawa M, Yamamoto YY, Oka Y, Matsushita T, Hanada K, Shirai K, Mano S, Shimizu T, Masuda T

    Plant Physiology   2024.07

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    Language:English   Publishing type:Research paper (scientific journal)

  • LHT1/MAC7 contributes to proper alternative splicing under long-term heat stress and mediates variation in the heat tolerance of Arabidopsis Reviewed

    5. Isono K, Nakamura K, Hanada K, Shirai K, Ueki M, Tanaka K, Tsuchimatsu T, Iuchi S, Kobayashi M, Yotsui I, Sakata Y, Taji T.

    PNAS Nexus   2023.12

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    Language:English   Publishing type:Research paper (scientific journal)

  • Expression profiles in knock-down transgenic plants of high and low diversified duplicate genes in Arabidopsis thaliana Reviewed

    T Takeda, A Ezoe, K Hanada

    Genes & Genetic Systems   98 ( 5 )   283 - 286   2023.12

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: https://doi.org/10.1266/ggs.23-00019

  • Unearth of small open reading frames (sORFs) in drought stress transcriptome of Oryza sativa subsp. indica Reviewed

    Sheue Ni Ong, Boon Chin Tan, Kousuke Hanada, Chee How Teo

    Gene   2023.06

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: https://doi.org/10.1016/j.gene.2023.147579

  • An augmented attention-based lightweight CNN model for plant water stress detection Reviewed

    Mohd Hider Kamarudin, Zool Hilmi Ismail, Noor Baity Saidi, Kousuke Hanada

    Applied Intelligence   2023.04

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    Authorship:Last author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: https://doi.org/10.1007/s10489-023-04583-8

  • Enhanced growth rate under elevated CO2 conditions was observed for transgenic lines of genes identified by intraspecific variation analyses in Arabidopsis thaliana Reviewed

    Riichi Oguchi, Kousuke Hanada, Minami Shimizu, Masako Mishio, Hiroshi Ozaki, Kouki Hikosaka

    Plant Molecular Biology   110 ( 4-5 )   1 - 13   2022.04

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  • Genome-wide association study of local thai indica rice seedlings exposed to excessive iron Reviewed International journal

    Kaewcheenchai R., Vejchasarn P., Hanada K., Shirai K., Jantasuriyarat C., Juntawong P.

    Plants   10 ( 4 )   798   2021.04

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.3390/plants10040798

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  • Degree of functional divergence in duplicates is associated with distinct roles in plant evolution. Reviewed

    Akihiro Ezoe, Kazumasa Shirai, Kousuke Hanada

    Molecular Biology and Evolution   38 ( 4 )   1447 - 1459   2021.04

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1093/molbev/msaa302.

  • 植物と共生菌の間でのシグナル伝達するペプチドの探索に向けて Invited

    伊東 梓帆, 花田耕介

    アグリバイオ   5 ( 5 )   52 - 54   2021.03

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    Authorship:Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)

  • 塩ストレス耐性を強化するペプチド性遺伝子 Invited

    近藤 隆之, 花田耕介

    アグリバイオ   5 ( 5 )   23 - 28   2021.03

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    Authorship:Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)

  • Effect of small coding genes on the circadian rhythms under elevated CO2 conditions in plants Reviewed International journal

    Higuchi-Takeuchi M., Kondo T., Shimizu M., Kim Y.W., Shinozaki K., Hanada K.

    Plant Molecular Biology ( 104(1-2):55-65 )   104 ( 1-2 )   55 - 65   2020.09

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1007/s11103-020-01023-w

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  • 豚で起きていたコロナウイルスに近縁なウイルスでのパンデミック感染の紹介 Invited Reviewed

    花田 耕介

    生物の化学「遺伝」   75 ( 1 )   16 - 19   2020.05

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    Authorship:Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)

  • Identification of endogenous small peptides involved in rice immunity through transcriptomics‐and proteomics‐based screening Reviewed

    12. Wang P, Yao S, Kosami KI, Guo T, Li J, Zhang Y, Fukao Y, Kaneko‐Kawano Y, Zhang H, She YM, Wang P, Xing W, Hanada K, Liu R, Kawano

    Plant Biotechnology Journal   18 ( 2 )   415 - 428   2020.02

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1111/pbi.13208

  • Contribution of Functional Divergence Through Copy Number Variations to the Inter-Species and Intra-Species Diversity in Specialized Metabolites Invited Reviewed

    Shirai K., Hanada K.

    Frontiers in Plant Science   10   2019.11

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.3389/fpls.2019.01567

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  • Tyr82 amino acid mutation in pb1 polymerase induces an influenza virus mutator phenotype Reviewed

    Naito T., Shirai K., Mori K., Muratsu H., Ushirogawa H., Ohniwa R., Hanada K., Saito M.

    Journal of Virology   93 ( 22 )   2019.11

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1128/JVI.00834-19

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  • Dephosphorylation of clustered phosphoserine residues in human Grb14 by protein phosphatase 1 and its effect on insulin receptor complex formation Reviewed

    Taira J., Yoshida K., Takemoto M., Hanada K., Sakamoto H.

    Journal of Peptide Science   25 ( 10 )   2019.10

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1002/psc.3207

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  • Hormone-like peptides and small coding genes in plant stress signaling and development Invited Reviewed

    Takahashi F., Hanada K., Kondo T., Shinozaki K.

    Current Opinion in Plant Biology   51   88 - 95   2019.10

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    Authorship:Lead author   Language:English   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)

    DOI: 10.1016/j.pbi.2019.05.011

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  • Transcriptome analysis and identification of a transcriptional regulatory network in the response to H<inf>2</inf>O<inf>2</inf> Reviewed

    Hieno A., Naznin H., Inaba-Hasegawa K., Yokogawa T., Hayami N., Nomoto M., Tada Y., Yokogawa T., Higuchi-Takeuchi M., Hanada K., Matsui M., Ikeda Y., Hojo Y., Hirayama T., Kusunoki K., Koyama H., Mitsuda N., Yamamoto Y.

    Plant Physiology   180 ( 3 )   1629 - 1646   2019.07

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1104/pp.18.01426

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  • Transcriptome data and transgenic library of overexpression for small coding genes of <i>Arabidopsis thaliana</i> Invited

    Takeda Tomoyuki, Hanada Kousuke

    Regulation of Plant Growth & Development ( The Japanese Society for Chemical Regulation of Plants )   54 ( 1 )   60 - 65   2019.01

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    Authorship:Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)

    <p>Functional roles of small coding genes tend to be ignored in 20 years because small coding genes have not been identified in even highly accurate genomes of model organisms. In plants, it is recognized that small coding genes play essential roles within a single cell as well as intercellular signal transductions like hormone-like peptides. However, many of small coding genes are not annotated in plant genomes even if novel hormone-like peptides encoded by small coding genes tend to be hidden in plant genomes. Here, we introduce transcriptome database (HanaDB-AT) and transgenic library of overexpression with focusing on Arabidopsis novel and annotated small coding genes. The database and transgenic library should be useful tools to discover novel hormone-like peptides as well as other functional peptides in small coding genes.</p>

    DOI: 10.18978/jscrp.54.1_60

    CiNii Article

    CiNii Research

    Other Link: https://ci.nii.ac.jp/naid/130007668423

  • A highly specific genome-wide association study integrated with transcriptome data reveals the contribution of copy number variations to specialized metabolites in Arabidopsis thaliana accessions Reviewed

    2017.09

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

  • Mutant selection in the self-incompatible plant radish (Raphanus sativus L. var. sativus) using two-step TILLING. Reviewed

    67 ( 3 )   268 - 276   2017.06

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  • Molecular Evolution and Functional Characterization of a Bifunctional Decarboxylase Involved in Lycopodium Alkaloid Biosynthesis. Reviewed

    171 ( 4 )   2432 - 2444   2016.06

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1104/pp.16.00639

  • What plant trait explains the variations in relative growth rate and in its response to the elevated CO2 concentration among Arabidopsis thaliana ecotypes derived from a variety of habitats? Reviewed

    Oecologia   2016.05

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    Language:English   Publishing type:Research paper (scientific journal)

  • Phytochrome controls alternative splicing to mediate light responses in Arabidopsis. Reviewed

    2014.12

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1073/pnas.1407147112

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  • Transcriptomic analysis of rice in response to iron deficiency and excess. Reviewed

    2014.09

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1186/s12284-014-0018-1

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  • Substantial expression of novel small open reading frames in Oryza sativa.

    2014.02

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.4161/psb.27848

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  • 25. Identification and biochemical characterization of wheat ABA receptors, which are identified by bioinformatics analysis Invited

    Mega Ryosuke, Hanada Kousuke, Okamoto Masanori

    The Janapese Society for Chemical Regulation of Plants, Abstract ( The Janapese Society for Chemical Regulation of Plants )   49 ( 0 )   2014.01

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.18978/jscrpanb.49.Supplement_43

    CiNii Article

    Other Link: https://ci.nii.ac.jp/naid/110009865114

  • Small open reading frames associated with morphogenesis are hidden in plant genomes. Reviewed

    110   2395 - 2400   2013.02

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1073/pnas.1213958110

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  • Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads. Reviewed

    ( 28 )   929 - 937   2012.04

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1093/bioinformatics/bts065

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  • Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Reviewed

    69 ( 1 )   154 - 167   2012.01

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1111/j.1365-313X.2011.04779.x

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  • Tissue-specific Transcriptome Analysis Reveals Cell Wall Metabolism, Flavonol Biosynthesis, and Defense Responses are Activated in the Endosperm of Germinating Arabidopsis thaliana Seeds. Reviewed

    2012.01

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1093/pcp/pcr171

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  • Origin and evolution of genes related to ABA metabolism and its signaling pathways. Reviewed

    124 ( 4 )   455 - 465   2011.07

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1007/s10265-011-0431-0

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  • An evolutionary view of functional diversity in family 1 glycosyltransferases. Reviewed

    66 ( 1 )   182 - 193   2011.04

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1111/j.1365-313X.2011.04493.x

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  • ARTADE2DB: Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic-Structure-Based Dynamic Expression (DSDE) Analyses. Reviewed

    52 ( 2 )   254 - 264   2011.02

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1093/pcp/pcq202

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  • Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources.

    123 ( 3 )   291 - 298   2010.05

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    Language:English   Publishing type:Research paper (scientific journal)

    DOI: 10.1007/s10265-010-0337-2

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  • sORF finder: a program package to identify small open reading frames with high coding potential. Reviewed

    26 ( 3 )   399 - 400   2010.02

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

  • Evolutionary Persistence of Functional Compensation by Duplicate Genes in Arabidopsis. Reviewed

    29 ( 1 )   409 - 414   2009.10

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  • PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants. Reviewed

    50 ( 7 )   1249 - 1259   2009.07

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  • Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Reviewed

    150 ( 1 )   12 - 26   2009.05

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    Language:English   Publishing type:Research paper (scientific journal)

  • Increased expression and protein divergence in Increased expression and protein divergence in duplicate genes is associated with morphological diversification. Reviewed

    5 ( 12 )   2009.05

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)

  • Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Reviewed

    106 ( 7 )   2453 - 2458   2009.02

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  • Functional role of Pack-MULEs in rice inferred from purifying selection and expression profile. Reviewed

    21 ( 1 )   25 - 38   2009.01

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Conference Prsentations (Oral, Poster)

  • Exhaustive search of de-novo genes in Arabidopsis population

    Kousuke Hanada

    International symposium on Multifaceted Protein Dynamics 

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    Event date: 2024.09.02 - 2024.09.05   Language:English  

  • 人工的に異質倍数性を引き起こしたコムギで起こる遺伝子発現の変化

    坂井 伶平 , 武田 智之, 豊留 龍也 , 岡本 昌憲, 田中 啓介, 小林 久人, 白井 一正, 辻本 壽, 花田 耕介

    第7回植物インフォマティクス研究会年会  植物インフォマティクス研究会

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    Event date: 2024.08.31 - 2024.09.01   Language:Japanese  

  • 人工的に異質倍数性を引き起こしたコムギで起こる遺伝子発現の変化

    坂井 伶平 , 武田 智之, 豊留 龍也 , 岡本 昌憲, 田中 啓介, 小林 久人, 白井 一正, 辻本 壽, 花田 耕介

    日本進化学会  日本進化学会

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    Event date: 2024.08.21 - 2024.08.24   Language:Japanese  

  • フェノーム解析に基づいた de novo 遺伝子の探索

    武田智之,中南健太郎,金有王,白井一正,樋口(竹内)美恵子,清水みなみ,近 藤隆之,岡本正憲,仁志蘭子,関原明,篠崎一雄,松井南,花田耕介

    日本進化学会  日本進化学会

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    Event date: 2023.08.01 - 2023.08.03   Language:Japanese  

  • 環境変化に応じた植物の転写開始点制御の網羅的解明

    "白井一正、岡義人、木村泉美、塙満愉、豊田隆藏、岩瀬哲、杉本慶子、宮田和輝、榊原均、肥後あすか、打田直行、梅澤泰史、野元美佳、多田安臣、保浦徳昇、芦苅基行 、大久保祐里、松林嘉克、高橋宏二、木下俊則、児玉豊、松下智直、花田耕介

    日本進化学会  日本進化学会

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    Event date: 2023.08.01 - 2023.08.03   Language:Japanese  

  • "Contribution of epigenetic mutations to the adaptive evolution of plant by regulating specialized metabolism"

    Kazumasa Shirai, Mitsuhiko P. Sato, Ranko Nishi, Masahide Seki, Yutaka Suzuki, and Kousuke Hanada"

    33rd International Conference on Arabidopsis Research 

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    Event date: 2023.06.05 - 2023.06.08   Language:English  

  • "Phenome analysis focusing on small open reading frames found an Arabidopsis-specific emerged de novo gene enhancing drought tolerance

    Takeda T, Kondo T, Ohbayashi I, Nagata C, Okamoto M, Kodama Y, Higuchi-Takeuchi H2, Shimizu M2, Nomoto M3, Tada Y3, Jikumaru Y5, Kamiya Y, Taira J, Shinozaki K, Hanada K

    33rd International Conference on Arabidopsis Research 

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    Event date: 2023.06.05 - 2023.06.08   Language:English  

  • Lineage-Specifically Emerged Genes in Plant Evolution Invited

    Kousuke Hanada

    Biodiversity Research Center, Academia Sinica 

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    Event date: 2023.04.13   Language:English  

  • 糸状菌への耐性を強化する植物分泌ペプチドの同定

    早瀬尚人 近藤隆之 白井一正 桑田啓子 柘植尚志 花田耕介

    第14回中国地域育種談話会, 山口大学 

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    Event date: 2022.12.10 - 2022.12.11   Language:English  

  • 多様な植物共生菌による植物の生理活性変化の分化メカニズムの解明

    伊東梓帆・荒巻徹・山崎裕司・辻本壽・花田耕介

    鳥取大学乾燥地研究センター、令和4年度共同研究発表会 

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    Event date: 2022.12.03 - 2022.12.04   Language:English  

  • Identification of genes and signaling pathways inferred by plant omics data Invited

    Kousuke Hanada

    Global ATGS/International College, National Taiwan University 

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    Event date: 2022.11.23   Language:English  

  • AI技術で生物進化の原動力になる遺伝子群の同定 Invited

    花田耕介

    AIシンポジウム「生物工学×AI=∞ ~生物工学におけるAI活用術~」 

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    Event date: 2022.08.19   Language:Japanese  

  • Secreted peptide AT32 inhibits brassinosteroid signaling via binding to brassinosteroid receptor.

    T. Kondo, T. Takeda, I. Ohbayashi, You-wang Kim, M. Okamoto, Y. Kodama, T. Yoshizumi, T. Haraguchi, M. Higuchi-Takeuchi, M. Shimizu, M. Nomoto, Y. Tada, Y. Jikumaru, Y. Kamiya, K. Shinozaki, K. Kuwata, S. Oishi, J. Taira, H. Sakamoto, T. Kusakabe, J.M. Li, K. Hanada

    第63回日本植物生理学会年会 

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    Event date: 2022.03.22 - 2022.03.24   Language:English  

  • A mitochondria-originating de-novo gene controls flowering timing in <i>Arabidopsis thaliana

    Tomoyuki Takeda1, Kazumasa Shirai1, You-wang Kim1, Mieko Higuchi-Takeuchi2, Minami Shimizu2, Takayuki Kondo1, Tomokazu Ushijima3, Tomonao Matsusita4, Kazuo Shinozaki2, Kousuke Hanada1

    第63回日本植物生理学会年会 

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    Event date: 2022.03.22 - 2022.03.24   Language:English  

  • 植物病原性糸状菌に存在するCD染色体の進化的起源の解明

    大石 好則・播本 佳明 ・八田理恵子・新城 明久・張 裕介・間瀬 千晶・原 歩美・川瀬めぐみ・近藤日佳理・後藤 千保・宮川 泰輝・鈴木 侑美・森 汐理・赤木 靖典・児玉基一朗・秋光 和也・山本 幹博・柘植 尚志・花田 耕介

    第13回中国地域育種談話会 

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    Event date: 2021.12.11   Language:English  

  • 植物病原性糸状菌に存在するCD染色体の進化的起源の解明

    大石 好則・播本 佳明 ・八田理恵子・新城 明久・張 裕介・間瀬 千晶・原 歩美・川瀬めぐみ・近藤日佳理・後藤 千保・宮川 泰輝・鈴木 侑美・森 汐理・赤木 靖典・児玉基一朗・秋光 和也・山本 幹博・柘植 尚志・花田 耕介

    第4回植物インフォマティクス研究会 

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    Event date: 2021.10.04   Language:English  

  • 植物のDNAメチル化に対するSelective sweepの検出

    白井 一正,佐藤 光彦,仁志 蘭子,関 真秀,鈴木 穣,花田 耕介

    第4回植物インフォマティクス研究会 

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    Event date: 2021.10.04   Language:English  

  • トランスクリプトームとプロテオーム解析を用いた 植物免疫を上昇させる細胞外分泌ペプチドの探索

    花田耕介

    日本プロテオーム学会 

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    Event date: 2021.07.21   Language:English  

  • Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants Invited

    Kousuke Hanada

    Genome Concept Centennial Symposium 

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    Event date: 2021.02.15 - 2021.02.17   Language:English  

  • Frequently observed convergent evolution by either protein divergence generated by transcription starting sites (TSS) shifts or by gene duplication under red-light response in three plants

    江副 晃洋、牛島 智一、岡義人、金載旭、Zhang Ping、You-Liang Cheng、 Shih-Long Tu、鈴木穣、白井一正、松下 智直、花田耕介

    第22 回日本進化学会年会、オンライン開催 

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    Event date: 2020.09.06 - 2020.09.09   Language:English  

  • ブラシノステロイドのシグナル伝達を阻害する新奇分泌ペプチドの機能解析

    近藤隆之,大林祝,金有王,岡本昌憲,児玉豊,吉積毅,原口武士,樋口美栄子,清水みなみ,野元美佳,多田安臣,軸丸裕介,神谷勇治,篠崎一雄,桑田啓子,大石俊輔,日下部宜宏,李在萬, 花田耕介

    第61回日本植物生理学会年会 

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    Event date: 2020.03.19 - 2020.03.21   Language:English  

  • Functional Analysis of novel small coding gene in plant genome

    T.Takeda, K.Nakaminami, M.Higuch-Takeuchi, YW.Kim, M.Shimizu, M.Okamoto, T.Yoshizumi, R.Nishi, M.Seki, K.Shinozaki, M.Matsui, K.Hanada

    第61回日本植物生理学会年会 

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    Event date: 2020.03.19 - 2020.03.21   Language:English  

  • 植物での赤色光シグナル下での転写開始点制御と重複遺伝子の代替的役割 

    江副 晃洋、牛島 智一、Zhang Ping、You-Liang Cheng、Shih-Long Tu、鈴木 穣、阿久根 清羅、白井 一正、松下 智直、花田 耕介

    第42回日本分子生物学会年会 

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    Event date: 2019.12.03 - 2019.12.06   Language:English  

  • 植物ゲノムに存在するペプチド性新奇短い遺伝子の機能解析

    武田智之、金有王、樋口美栄子、清水みなみ、岡本昌憲、吉積毅、中南健太郎、仁志蘭子、関原明、篠崎一雄、松井南、花田耕介

    第42回日本分子生物学会年会 

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    Event date: 2019.12.03 - 2019.12.06   Language:English  

  • ブラシノステロイドのシグナル伝達を阻害する新奇分泌ペプチドの機能解析

    近藤隆之,大林祝,金有王,岡本昌憲,児玉豊,吉積毅,原口武士,樋口美栄子,清水みなみ,野元美佳,多田安臣,軸丸裕介,神谷勇治,篠崎一雄,桑田啓子,大石俊輔,日下部宜宏,李在萬, 花田耕介

    第42回日本分子生物学会年会 

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    Event date: 2019.12.03 - 2019.12.06   Language:English  

  • Finding a Novel Hormone-like Peptide Inducing Anti-biotic effects and Callus formation

    Y. Nishimura, R. Torii, Y. Kim, M. Higuchi, I. Ohbayashi, M. Okamoto, M. Shimizu, T. Yoshizumi, K. Nakaminami, K. Shinozaki, M. Seki, M. Matui, K. Hanada

    7th International Symposium on Applied Engineering and Science (Malaysia) 

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    Event date: 2019.11.11 - 2019.11.12   Language:English  

  • To Understand Symbiotic Effects of Fungal Endophytes Isolated from Various Crops

    Tatsuya Toyodome, Amalia Mohd. Hashim, Noor Baity Saidi, Mohd Termizi Yusof, Wan Zuhainis Saad, Kousuke Hanada

    7th International Symposium on Applied Engineering and Science (Malaysia) 

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    Event date: 2019.11.11 - 2019.11.12   Language:English  

  • 植物のゲノム解析を 10年ちょっとやってきて。。。 Invited

    花田耕介

    植物分子生物学シンポジウム 

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    Event date: 2019.08.30   Language:Japanese  

  • The origin and evolution of Japanese cultivated radishes. Invited

    Kousuke Hanada

    The 17th Asian Bioinformatics Consortium 

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    Event date: 2019.08.22 - 2019.08.23   Language:English  

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Industrial Property

  • 接木接着剤

    野田口理孝, 白武勝裕, 黒谷賢一, 田畑亮, 川勝弥一, 川口航平, 深尾陽一郎, 中林亮, 花田耕介

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    Application no:特願2019-052727 

  • 植物病原菌に対する抗菌活性を有する抗菌ペプチド

    阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田(桑田)啓子

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    Application no:特願2019-042748 

  • 植物病原菌に対する抗菌活性を有する抗菌ペプチド

    阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田(桑田)啓子

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    Application no:特願2019-042524 

  • 植物病原菌に対する抗菌活性を有する抗菌ペプチド

    阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田(桑田)啓子

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    Application no:特願2019-042837 

  • 植物病原菌に対する抗菌活性を有する抗菌ペプチド

    阿部円佳, 近藤聡, 島田武彦, 花田耕介, 柘植尚志, 望田(桑田)啓子

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    Application no:特願2019-042601 

Lectures

  • Lineage-specifically emerged genes in plant evolution.

    International Symposium on Evolutionary Genomics and Bioinformatics 2025  2025.05 

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    Event date: 2025.05.02 - 2025.05.03   Language:English   Presentation type:Invited lecture  

  • Identification and Characterization of Microproteins in Arabidopsis

    Keystone Symposium "Microproteins: from Discovery to Applications"  2025.02  Keystone Symposium

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    Event date: 2025.02.05 - 2025.02.08   Language:English   Presentation type:Special lecture  

  • AI技術で生物進化の原動力になる遺伝子群の同定

    関西支部若手企画シンポジウム  2022.08 

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    Language:Japanese   Presentation type:Invited lecture  

  • DX駆動解析による植物の生理活性ペプチドの開発

    フード&ヘルスイノベーションフォーラム  2025.05 

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    Language:Japanese   Presentation type:Invited lecture  

  • Identification and Characterization of Microproteins in Arabidopsis

    National Taiwan University  2025.04 

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    Language:English   Presentation type:Invited lecture  

  • シロイヌナズナ集団に出現した de-novo 遺伝子の探索

    日本進化学会  2024.08  日本進化学会

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    Event date: 2024.08.21 - 2024.08.24   Language:Japanese   Presentation type:Invited lecture  

  • Lineage-specifically emerged genes in plant evolution

    Max Planck Institute for Biology Tübingen  2024.03  Max Planck Institute for Biology Tübingen

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    Language:English   Presentation type:Invited lecture  

  • ゲノム情報から始まるイノベーション

    三大学連携シンポジウム  2023.12  東京工業大学

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    Language:Japanese   Presentation type:Invited lecture   Venue:東京  

  • Lineage-specifically emerged genes in plant evolution

    Gregor Mendel Institute of Molecular Plant Biology  2023.12  Gregor Mendel Institute of Molecular Plant Biology

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    Language:English   Presentation type:Invited lecture  

  • トランスクリプトームとプロテオーム解析を用いた 植物免疫を上昇させる細胞外分泌ペプチドの探索

    日本プロテオーム学会  2021.07 

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    Presentation type:Invited lecture  

  • Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

    Genome Concept Centennial Symposium  2021.02 

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    Language:English   Presentation type:Invited lecture  

  • Novel small hormone-like peptides in Arabidopsis

    SCMB MBS Special Seminar, The University of Queensland, Australia  2020.02 

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    Presentation type:Keynote lecture  

  • Symbiotic Effect of Fungal Endophyte is Controlled by Salicylic Acid Signaling.

    7th International Symposium on Applied Engineering and Science (Malaysia)  2019.11 

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    Language:English   Presentation type:Special lecture  

  • 日本栽培ダイコンの進化とその起源

    第21回 日本進化学会(北海道)  2019.08 

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    Event date: 2019.08.08   Language:English   Presentation type:Invited lecture  

  • Small coding genes hidden in plant genomes, encode multiple hormone-like peptides

    Japan-Taiwan Plant Biology 2019  2019.03 

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    Language:English   Presentation type:Invited lecture  

  • ゲノム解析で見えない遺伝子に迫る

    第50回サイエンスカフェ (九工大・飯塚キャンパス)  2019.01 

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    Language:Japanese   Presentation type:Special lecture  

  • 重複遺伝子の冗長的な機能による頑健性の意義

    東北大学理学部キャンパス生物セミナー  2018.11 

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    Language:Japanese   Presentation type:Invited lecture  

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Honors and Awards

  • Academy Fellowship

    Austrian Academy of Science   Emergence of de-novo genes in Arabidopsis   2023.11.01

    Kousuke Hanada

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    Country:Austria

  • 第4回植物インフォマティクス研究会

    植物インフォマティクス研究会   2021.10.04

    白井 一正,佐藤 光彦,仁志 蘭子,関 真秀,鈴木 穣,花田 耕介

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    Country:Japan

    植物のDNAメチル化に対するSelective sweepの検出

  • 第 12 回中国地域育種談話会

    中国地域育種談話会   2020.12.12

    白井一正、石塚航、手塚あゆみ、豊田敦 、小林伸雄、河田雅圭、川北篤 、村上哲明、藤山秋佐 夫、清水みなみ、鈴木穣、彦坂幸毅、森長真一、花田耕介

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    Country:Japan

    日本栽培ダイコンの起源を探る

  • 研究奨励賞 「網羅的なゲノム情報を利用した進化ゲノミクス研究」

    日本進化学会   2014.06

    花田耕介

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    Country:Japan

  • 九州工業大学職員 SS評価に基づく表彰

    九州工業大学   2014.03.06

    花田耕介

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    Country:Japan

  • 研究奨励賞 「Breakthrough in evolutionary mechanism of duplicate genes based on bioinformatics」

    理化学研究所   2012.03

    花田 耕介

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    Country:Japan

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Grants-in-Aid for Scientific Research

  • シロイヌナズナ生態株間の二次代謝産物量をコントロールするncRNA遺伝子の役割

    Grant number:25710017  2013.04 - 2016.03   若手研究(A)

  • アルタナリア病原菌の植物寄生性を決定するCD染色体の進化的起源と成立機構

    Grant number:23248007  2011.04 - 2015.03   基盤研究(A)

Other External Funds

  • de-novo genes in Arabidopsis

    2023.11 - 2024.04

    Austria Academic Fellow   Austria Academic Fellow

Other Research Activities

  • Engaging the Public in Wild Banana Exploration

    2025.08

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    ビルゲイツ財団の国際共同研究

  • Exploring the origins and functions of de novo genes and their roles in species diversification

    2024.11

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    International Integrated Collaboration Project for
    Kyushu-Okinawa Open University (KOOU)
    & University Academic Alliance in Taiwan (UAAT)
    での共同研究

Career of Research abroad

  • Emergence of genes in Arabidopsis population

    Gregor Mendel Institute of Molecular Plant Biology  Project Year:  2023.11.01 - 2024.04.30

Award for Educational Activities

  • 第7回植物インフォマティクス研究会年会発表賞

    植物インフォマティクス研究会   人工的に異質倍数性を引き起こしたコムギで起こる遺伝子発現の変化   2024.09.01

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    受賞国:Japan

  • 第3回若手の会・学術変革A「不均一環境と植物」発表賞

    学術変革A「不均一環境と植物」   イネの新規ホルモン様ペプチドをコードする遺伝子の機能解析   2023.10.27

  • 令和4年度鳥取大学乾燥地研究センター共同研究発表会

    鳥取大学乾燥地研究センター   多様な植物共生菌による植物の生理活性変化の分化メカニズムの解明   2022.12.04

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    受賞国:Japan

    多様な植物共生菌による植物の生理活性変化の分化メカニズムの解明

  • 優秀発表賞(豊留、中国地域育種談話会)

    中国地域育種談話会   2020.12

  • 優秀発表賞(豊留 中国地域育種談話会)

    中国地域育種談話会   2019.12

  • 優秀発表賞(武田 中国地域育種談話会)

    中国地域育種談話会   2018.12

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Activities of Academic societies and Committees

  • Frontiers in Genetics   Associate editor  

    2022.05

  • 植物インフォマティクス研究会   運営委員  

    2018.09

Social activity outside the university

  • 最先端の研究を介した教育活動

    Role(s):Lecturer

    筑紫女学園中等部  2023.09.01

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    Audience: Junior students

    Type:Seminar, workshop

  • ゲノム情報を活用した 生命メカニズムの解明

    Role(s):Lecturer

    九州工業大学  福岡県立福岡高等学校  2022.07.22

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    Audience: High school students

    Type:Visiting lecture

  • 未来へつなげるバイオテクノロジー-生物を理解し社会に役立てる-

    Role(s):Lecturer

    九州工業大学  福岡県立福岡高等学校  2022.07.15

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    Audience: High school students

    Type:Visiting lecture