LSTM-PHV: prediction of human-virus protein-protein interactions by LSTM with word2vec Reviewed International journal

Tsukiyama S., Hasan M.M., Fujii S., Kurata H.

Briefings in bioinformatics   22 ( 6 )   2021.11

Genome-wide screening reveals a role for subcellular localization of CRBN in the anti-myeloma activity of pomalidomide Reviewed

Tateno S., Iida M., Fujii S., Suwa T., Katayama M., Tokuyama H., Yamamoto J., Ito T., Sakamoto S., Handa H., Yamaguchi Y.

Scientific Reports   10 ( 1 )   2020.12

The role of Mediator and Little Elongation Complex in transcription termination Reviewed

Takahashi H., Ranjan A., Chen S., Suzuki H., Shibata M., Hirose T., Hirose H., Sasaki K., Abe R., Chen K., He Y., Zhang Y., Takigawa I., Tsukiyama T., Watanabe M., Fujii S., Iida M., Yamamoto J., Yamaguchi Y., Suzuki Y., Matsumoto M., Nakayama K.I., Washburn M.P., Saraf A., Florens L., Sato S., Tomomori-Sato C., Conaway R.C., Conaway J.W., Hatakeyama S.

Nature Communications   11 ( 1 )   2020.12

The interaction of cyclic naphthalene diimide with G-quadruplex under molecular crowding condition Reviewed

Zou T., Sato S., Yasukawa R., Takeuchi R., Ozaki S., Fujii S., Takenaka S.

Molecules   25 ( 3 )   2020.02

Cyclic Naphthalene Diimide with a Ferrocene Moiety as a Redox-Active Tetraplex-DNA Ligand Reviewed

Kaneyoshi S., Zou T., Ozaki S., Takeuchi R., Udou A., Nakahara T., Fujimoto K., Fujii S., Sato S., Takenaka S.

Chemistry - A European Journal   26 ( 1 )   139 - 142   2020.01

A simple and practical workflow for genotyping of CRISPR–Cas9-based knockout phenotypes using multiplexed amplicon sequencing Reviewed

Iida M., Suzuki M., Sakane Y., Nishide H., Uchiyama I., Yamamoto T., Suzuki K.i.T., Fujii S.

Genes to Cells   25 ( 7 )   498 - 509   2020.01

Functional analysis of thyroid hormone receptor beta in Xenopus tropicalis founders using CRISPR-Cas Reviewed International journal

Sakane Y., Iida M., Hasebe T., Fujii S., Buchholz D.R., Ishizuya-Oka A., Yamamoto T., Suzuki K.I.T.

Biology Open   7 ( 1 )   2018.01

Effects of 4-Hydroxy-2,3,3 ⁰ ,4 ⁰ ,5-Pentachlorobiphenyl (4-OH-CB107) on liver transcriptome in rats: Implication in the disruption of circadian rhythm and fatty acid metabolism Reviewed

Ochiai M., Iida M., Agusa T., Takaguchi K., Fujii S., Nomiyama K., Iwata H.

Toxicological Sciences   165 ( 1 )   118 - 130   2018.01

Identification of aryl hydrocarbon receptor signaling pathways altered in TCDD-treated red seabream embryos by transcriptome analysis Reviewed

Iida M., Fujii S., Uchida M., Nakamura H., Kagami Y., Agusa T., Hirano M., Bak S.M., Kim E.Y., Iwata H.

Aquatic Toxicology   177   156 - 170   2016.08

Rapid and efficient analysis of gene function using CRISPR-Cas9 in Xenopus tropicalis founders Reviewed

Shigeta M., Sakane Y., Iida M., Suzuki M., Kashiwagi K., Kashiwagi A., Fujii S., Yamamoto T., Suzuki K.

Genes to Cells   21 ( 7 )   755 - 771   2016.07

SMARCAD1 is an ATP-dependent stimulator of nucleosomal H2A acetylation via CBP, resulting in transcriptional regulation Reviewed

Scientific Reports   6   20179   2016.02

Diagnosis of Periodontal Disease from Saliva Samples Using Fourier Transform Infrared Microscopy Coupled with Partial Least Squares Discriminant Analysis Reviewed

Analytical Sciences   32 ( 2 )   225 - 231   2016.02

Dzip3 regulates developmental genes in mouse embryonic stem cells by reorganizing 3D chromatin conformation Reviewed

Scientific Reports   5   16567   2015.11

A Selective G-Quadruplex DNA-Stabilizing Ligand Based on a Cyclic Naphthalene Diimide Derivative Reviewed

Molecules   20 ( 6 )   10963 - 10979   2015.06

Thermodynamics and kinetic studies in the binding interaction of cyclic naphthalene diimide derivatives with double stranded DNAs Reviewed

Bioorganic & Medicinal Chemistry   23 ( 15 )   4769 - 4776   2015.06

Erratum: Cooperative binding of ferrocenylnaphthalene diimide carrying β-cyclodextrin converts double-stranded DNA to a rod-like structure (Bioconjugate Chemistry (2015) 26:3 (379-382) DOI: 10.1021/bc500535n) Reviewed

26 ( 4 )   2015.04

Cooperative Binding of Ferrocenylnaphthalene Diimide Carrying β-Cyclodextrin Converts Double-Stranded DNA to a Rod-Like Structure Reviewed

Bioconjugate Chemistry   26 ( 3 )   379 - 382   2015.03

Design of tetraplex specific ligands: cyclic naphthalene diimide Reviewed

Chemical Communications   50 ( 45 )   5967 - 5969   2014.04

NF-E2 p45 is important for establishing normal function of platelets Reviewed

Molecular and Cellular Biology   33 ( 14 )   2659 - 2670   2013.05

Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast Reviewed

23 ( 1 )   13 - 20   2009.10

DNA deformability and hydration studied by molecular dynamics simulation Reviewed

Y. Yonetani,H. Kono,S. Fujii,A. Sarai,N. Go

Mol. Simulation   33   103 - 107   2007.04

Sequence-dependent DNA deformability studied using molecular dynamics simulations Reviewed

S. Fujii,H. Kono,S. Takenaka,N. Go & A. Sarai

Nucleic Acid Research   35 ( 18 )   6063 - 6074   2007.04

蛋白質-DNA認識における配列依存的DNA backboneコンフォーメーションの役割

Satoshi Fujii

第7回日本蛋白質科学会年会