Cell surface display of a protein based on a tail-anchored membrane protein Reviewed

Sueda S., Tsuruga R., Hirakawa T., Fujii S.

Biochemical and Biophysical Research Communications   761   2025.05

An ATP detection system based on the enzyme reaction with biotin protein ligase Reviewed

Sueda S., Fujii S.

Analytical Biochemistry   696   2025.01

Naphthalene Diimides Carrying Two β-Cyclodextrins Prefer Telomere RNA G-Quadruplex Recognition Reviewed International journal

Zou T., Sato Y., Kaneyoshi S., Mano K., Yasukawa R., Nakano Y., Fujii S., Sato S., Takenaka S.

Molecules   27 ( 13 )   2022.07

Cyclic ferrocenylnaphthalene diimides as a probe for electrochemical telomerase assay Reviewed

Kaneyoshi S., Eguchi N., Fujimoto K., Fujii S., Sato S., Takenaka S.

Journal of Inorganic Biochemistry   230   2022.05

Electrochemical Method for G-quartet RNA Detection of COVID-19 Based on Cyclic Ferrocenylnaphthalene Diimide Reviewed

Kaneyoshi S., Murakami S., Ikeda T., Fujimoto K., Fujii S., Sato S., Takenaka S.

Electroanalysis   35 ( 4 )   2022.01

LSTM-PHV: prediction of human-virus protein-protein interactions by LSTM with word2vec Reviewed International journal

Tsukiyama S., Hasan M.M., Fujii S., Kurata H.

Briefings in bioinformatics   22 ( 6 )   2021.11

Genome-wide screening reveals a role for subcellular localization of CRBN in the anti-myeloma activity of pomalidomide Reviewed

Tateno S., Iida M., Fujii S., Suwa T., Katayama M., Tokuyama H., Yamamoto J., Ito T., Sakamoto S., Handa H., Yamaguchi Y.

Scientific Reports   10 ( 1 )   2020.12

The role of Mediator and Little Elongation Complex in transcription termination Reviewed

Takahashi H., Ranjan A., Chen S., Suzuki H., Shibata M., Hirose T., Hirose H., Sasaki K., Abe R., Chen K., He Y., Zhang Y., Takigawa I., Tsukiyama T., Watanabe M., Fujii S., Iida M., Yamamoto J., Yamaguchi Y., Suzuki Y., Matsumoto M., Nakayama K.I., Washburn M.P., Saraf A., Florens L., Sato S., Tomomori-Sato C., Conaway R.C., Conaway J.W., Hatakeyama S.

Nature Communications   11 ( 1 )   2020.12

The interaction of cyclic naphthalene diimide with G-quadruplex under molecular crowding condition Reviewed

Zou T., Sato S., Yasukawa R., Takeuchi R., Ozaki S., Fujii S., Takenaka S.

Molecules   25 ( 3 )   2020.02

Cyclic Naphthalene Diimide with a Ferrocene Moiety as a Redox-Active Tetraplex-DNA Ligand Reviewed

Kaneyoshi S., Zou T., Ozaki S., Takeuchi R., Udou A., Nakahara T., Fujimoto K., Fujii S., Sato S., Takenaka S.

Chemistry - A European Journal   26 ( 1 )   139 - 142   2020.01

A simple and practical workflow for genotyping of CRISPR–Cas9-based knockout phenotypes using multiplexed amplicon sequencing Reviewed

Iida M., Suzuki M., Sakane Y., Nishide H., Uchiyama I., Yamamoto T., Suzuki K.i.T., Fujii S.

Genes to Cells   25 ( 7 )   498 - 509   2020.01

Functional analysis of thyroid hormone receptor beta in Xenopus tropicalis founders using CRISPR-Cas Reviewed International journal

Sakane Y., Iida M., Hasebe T., Fujii S., Buchholz D.R., Ishizuya-Oka A., Yamamoto T., Suzuki K.I.T.

Biology Open   7 ( 1 )   2018.01

Effects of 4-Hydroxy-2,3,3 ⁰ ,4 ⁰ ,5-Pentachlorobiphenyl (4-OH-CB107) on liver transcriptome in rats: Implication in the disruption of circadian rhythm and fatty acid metabolism Reviewed

Ochiai M., Iida M., Agusa T., Takaguchi K., Fujii S., Nomiyama K., Iwata H.

Toxicological Sciences   165 ( 1 )   118 - 130   2018.01

Identification of aryl hydrocarbon receptor signaling pathways altered in TCDD-treated red seabream embryos by transcriptome analysis Reviewed

Iida M., Fujii S., Uchida M., Nakamura H., Kagami Y., Agusa T., Hirano M., Bak S.M., Kim E.Y., Iwata H.

Aquatic Toxicology   177   156 - 170   2016.08

Rapid and efficient analysis of gene function using CRISPR-Cas9 in Xenopus tropicalis founders Reviewed

Shigeta M., Sakane Y., Iida M., Suzuki M., Kashiwagi K., Kashiwagi A., Fujii S., Yamamoto T., Suzuki K.

Genes to Cells   21 ( 7 )   755 - 771   2016.07

SMARCAD1 is an ATP-dependent stimulator of nucleosomal H2A acetylation via CBP, resulting in transcriptional regulation Reviewed

Scientific Reports   6   20179   2016.02

Diagnosis of Periodontal Disease from Saliva Samples Using Fourier Transform Infrared Microscopy Coupled with Partial Least Squares Discriminant Analysis Reviewed

Analytical Sciences   32 ( 2 )   225 - 231   2016.02

Dzip3 regulates developmental genes in mouse embryonic stem cells by reorganizing 3D chromatin conformation Reviewed

Scientific Reports   5   16567   2015.11

A Selective G-Quadruplex DNA-Stabilizing Ligand Based on a Cyclic Naphthalene Diimide Derivative Reviewed

Molecules   20 ( 6 )   10963 - 10979   2015.06

Thermodynamics and kinetic studies in the binding interaction of cyclic naphthalene diimide derivatives with double stranded DNAs Reviewed

Bioorganic & Medicinal Chemistry   23 ( 15 )   4769 - 4776   2015.06

Erratum: Cooperative binding of ferrocenylnaphthalene diimide carrying β-cyclodextrin converts double-stranded DNA to a rod-like structure (Bioconjugate Chemistry (2015) 26:3 (379-382) DOI: 10.1021/bc500535n) Reviewed

26 ( 4 )   2015.04

Cooperative Binding of Ferrocenylnaphthalene Diimide Carrying β-Cyclodextrin Converts Double-Stranded DNA to a Rod-Like Structure Reviewed

Bioconjugate Chemistry   26 ( 3 )   379 - 382   2015.03

Design of tetraplex specific ligands: cyclic naphthalene diimide Reviewed

Chemical Communications   50 ( 45 )   5967 - 5969   2014.04

NF-E2 p45 is important for establishing normal function of platelets Reviewed

Molecular and Cellular Biology   33 ( 14 )   2659 - 2670   2013.05

Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast Reviewed

23 ( 1 )   13 - 20   2009.10

DNA deformability and hydration studied by molecular dynamics simulation Reviewed

Y. Yonetani,H. Kono,S. Fujii,A. Sarai,N. Go

Mol. Simulation   33   103 - 107   2007.04

Sequence-dependent DNA deformability studied using molecular dynamics simulations Reviewed

S. Fujii,H. Kono,S. Takenaka,N. Go & A. Sarai

Nucleic Acid Research   35 ( 18 )   6063 - 6074   2007.04

新規G-quadruplex選択的結合薬による抗がん作用に関する遺伝子発現量解析

藤井　聡

第45回日本分子生物学会 

リンパ浮腫診断のための上肢体積測定ツールの開発

川原 美和

第４回日本リンパ浮腫学会総会 

アソシエーション分析によるゲノムワイド遺伝子調節関連データの統合解析

藤井　聡

第42回日本分子生物学会 

転写研究におけるウェットとドライの融合に関する考察

藤井　聡

冬の若手ワークショップ2017 

Identification of distinct subtypes in colorectal cancer with the survival and the primary sites

Yuuma Hosokawa

15th European Conference on Computational Biology 

Prognostic feature extraction in colorectal cancer by combining the gene expression data and the clinical data.

Asuka Kitajima

15th European Conference on Computational Biology 

The gene regulation by the combination of transcription factors: analysis of co-occurrence of small maf family and the other transcription factors

Satoshi Fujii

2010年日本バイオインフォマティクス学会年会 

The difference of the A-B form transition of DNA between the different sequences and environments studied by molecular dynamics simulations

Satoshi Fujii

第48回日本生物物理学会年会 

The effect of environment on the conformational transition of DNA studied by molecular dynamics simulations

Satoshi Fujii

第47回日本生物物理学会年会 

The conformational transition of DNA by the environment in molecular dynamics simulation

Satoshi Fujii

第46回日本生物物理学会年会 

タンパク質-DNA認識におけるDNA backbone構造の役割

藤井　聡

日本生物物理学会第45回年会 

蛋白質-DNA認識における配列依存的DNA backboneコンフォーメーションの役割

Satoshi Fujii

第7回日本蛋白質科学会年会